Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga05g01259.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4563
ACGTcount: A:0.31, C:0.24, G:0.20, T:0.24


Found at i:2754 original size:24 final size:24

Alignment explanation


    Indices: 2727--2778  Score: 61
    Period size: 24  Copynumber: 2.2  Consensus size: 24

       2717 TCAGATTATG

                       *        *    
       2727 CAGCAGAAGCATCAA-CTAATGCAA
          1 CAGCAGAAGCAGCAAGC-AAAGCAA

                  *                 
       2751 CAGCAGCAGCAGCAAGCAAAGCAA
          1 CAGCAGAAGCAGCAAGCAAAGCAA

                
       2775 CAGC
          1 CAGC

       2779 TGCCCACTCA


Statistics
Matches: 24,  Mismatches: 3, Indels: 2
        0.83            0.10        0.07

Matches are distributed among these distances:
  24   23  0.96
  25    1  0.04

ACGTcount: A:0.44, C:0.29, G:0.21, T:0.06


Consensus pattern (24 bp):   
CAGCAGAAGCAGCAAGCAAAGCAA
Done.