Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga05g01266.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2204
ACGTcount: A:0.31, C:0.16, G:0.24, T:0.29


Found at i:138 original size:12 final size:12

Alignment explanation


    Indices: 117--146  Score: 51
    Period size: 12  Copynumber: 2.5  Consensus size: 12

        107 ATCCTGTTGT

                        
        117 TGATGATGATGC
          1 TGATGATGATGC

                 *      
        129 TGATGCTGATGC
          1 TGATGATGATGC

                  
        141 TGATGA
          1 TGATGA

        147 ATTTGAGATT


Statistics
Matches: 16,  Mismatches: 2, Indels: 0
        0.89            0.11        0.00

Matches are distributed among these distances:
  12   16  1.00

ACGTcount: A:0.23, C:0.10, G:0.33, T:0.33


Consensus pattern (12 bp):   
TGATGATGATGC
Done.