Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga05g01267.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4505
ACGTcount: A:0.30, C:0.16, G:0.23, T:0.32


Found at i:2609 original size:112 final size:112

Alignment explanation


    Indices: 2382--2610  Score: 345
    Period size: 112  Copynumber: 2.0  Consensus size: 112

       2372 CTATATGCAC

                               *                    *  *                     
       2382 GTATAAAGCATAAGACATATAATAAACTCCAAAGTGTGGTTTAGTTTATCTACAAAACATGCAAT
          1 GTATAAAGCATAAGACATACAATAAACTCCAAAGTGTGGTCTAATTTATCTACAAAACATGCAAT

                               *                           
       2447 GTTTTTATTAGTCAATGTATGGTTCCTTATGGTCCATCCATATATAT
         66 GTTTTTATTAGTCAATGTACGGTTCCTTATGGTCCATCCATATATAT

                                     *   *                   *      *        
       2494 GTATAAAGCATAAGACATACAATAAGCTCTAAAGTGTGGTCTAATTTATTTACAAAGCATGCAAT
          1 GTATAAAGCATAAGACATACAATAAACTCCAAAGTGTGGTCTAATTTATCTACAAAACATGCAAT

                                                    *        
       2559 GTTTTTATTAGTCAATATGTACGGTTCCTTATGGTCCATCTATA-AT-T
         66 GTTTTTATTAGTC-A-ATGTACGGTTCCTTATGGTCCATCCATATATAT

                 
       2606 GTATA
          1 GTATA

       2611 CTCAAATATT


Statistics
Matches: 106,  Mismatches: 9, Indels: 4
        0.89            0.08        0.03

Matches are distributed among these distances:
 112   77  0.73
 113    3  0.03
 114   26  0.25

ACGTcount: A:0.34, C:0.14, G:0.15, T:0.37


Consensus pattern (112 bp):   
GTATAAAGCATAAGACATACAATAAACTCCAAAGTGTGGTCTAATTTATCTACAAAACATGCAAT
GTTTTTATTAGTCAATGTACGGTTCCTTATGGTCCATCCATATATAT
Done.