Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga01g01087.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3032
ACGTcount: A:0.29, C:0.18, G:0.16, T:0.37


Found at i:33 original size:18 final size:19

Alignment explanation


    Indices: 12--49  Score: 53
    Period size: 18  Copynumber: 2.1  Consensus size: 19

          2 TTATATACAC

                                
         12 ATATATA-TATATATT-TTT
          1 ATATATAGTAT-TATTGTTT

                               
         30 ATATATAGTATTATTGTTT
          1 ATATATAGTATTATTGTTT

             
         49 A
          1 A

         50 CTTTACTTTA


Statistics
Matches: 18,  Mismatches: 0, Indels: 3
        0.86            0.00        0.14

Matches are distributed among these distances:
  18   11  0.61
  19    7  0.39

ACGTcount: A:0.37, C:0.00, G:0.05, T:0.58


Consensus pattern (19 bp):   
ATATATAGTATTATTGTTT
Done.