Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga05g01289.F3

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 870

Length: 1450
ACGTcount: A:0.27, C:0.20, G:0.24, T:0.29


Found at i:109 original size:15 final size:17

Alignment explanation


    Indices: 76--109  Score: 54
    Period size: 15  Copynumber: 2.1  Consensus size: 17

         66 ATAAAATTCC

                             
         76 AATCTCCTGTTTCCAGA
          1 AATCTCCTGTTTCCAGA

                             
         93 AATCT-CTGTTT-CAGA
          1 AATCTCCTGTTTCCAGA

              
        108 AA
          1 AA

        110 AAAAATGCCA


Statistics
Matches: 17,  Mismatches: 0, Indels: 2
        0.89            0.00        0.11

Matches are distributed among these distances:
  15    6  0.35
  16    6  0.35
  17    5  0.29

ACGTcount: A:0.29, C:0.24, G:0.12, T:0.35


Consensus pattern (17 bp):   
AATCTCCTGTTTCCAGA
Done.