Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga05g01307.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 490

Length: 817
ACGTcount: A:0.25, C:0.26, G:0.18, T:0.30


Found at i:693 original size:7 final size:7

Alignment explanation


    Indices: 681--716  Score: 72
    Period size: 7  Copynumber: 5.1  Consensus size: 7

        671 CAATCTTCTT

                   
        681 ACACTTC
          1 ACACTTC

                   
        688 ACACTTC
          1 ACACTTC

                   
        695 ACACTTC
          1 ACACTTC

                   
        702 ACACTTC
          1 ACACTTC

                   
        709 ACACTTC
          1 ACACTTC

             
        716 A
          1 A

        717 TGATTAATTA


Statistics
Matches: 29,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   7   29  1.00

ACGTcount: A:0.31, C:0.42, G:0.00, T:0.28


Consensus pattern (7 bp):   
ACACTTC

Done.