Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga05g01310.F9

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3411
ACGTcount: A:0.28, C:0.17, G:0.19, T:0.36


Found at i:187 original size:48 final size:48

Alignment explanation


    Indices: 132--228  Score: 194
    Period size: 48  Copynumber: 2.0  Consensus size: 48

        122 ATTGATTTAA

                                                            
        132 TCGGTAACCTTTTAAGTTTGTCTATTCTTTTTCAAGGTTTGAATATTC
          1 TCGGTAACCTTTTAAGTTTGTCTATTCTTTTTCAAGGTTTGAATATTC

                                                            
        180 TCGGTAACCTTTTAAGTTTGTCTATTCTTTTTCAAGGTTTGAATATTC
          1 TCGGTAACCTTTTAAGTTTGTCTATTCTTTTTCAAGGTTTGAATATTC

             
        228 T
          1 T

        229 TTCTTTTTAG


Statistics
Matches: 49,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  48   49  1.00

ACGTcount: A:0.21, C:0.14, G:0.14, T:0.51


Consensus pattern (48 bp):   
TCGGTAACCTTTTAAGTTTGTCTATTCTTTTTCAAGGTTTGAATATTC
Done.