Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga05g01330.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1709
ACGTcount: A:0.34, C:0.20, G:0.17, T:0.30


Found at i:881 original size:26 final size:24

Alignment explanation


    Indices: 841--900  Score: 75
    Period size: 26  Copynumber: 2.4  Consensus size: 24

        831 TTATTTCATT

                   * *         *    
        841 AAATAAAAAAATTTAAAAATATAA
          1 AAATAAATATATTTAAAAACATAA

                                      
        865 TAAATCAAATATATTTAAAAACATAA
          1 -AAAT-AAATATATTTAAAAACATAA

                      
        891 AAATAAATAT
          1 AAATAAATAT

        901 TAAAACAAAT


Statistics
Matches: 31,  Mismatches: 3, Indels: 3
        0.84            0.08        0.08

Matches are distributed among these distances:
  24    6  0.19
  25    8  0.26
  26   17  0.55

ACGTcount: A:0.68, C:0.03, G:0.00, T:0.28


Consensus pattern (24 bp):   
AAATAAATATATTTAAAAACATAA

Found at i:912 original size:22 final size:22

Alignment explanation


    Indices: 871--929  Score: 70
    Period size: 21  Copynumber: 2.8  Consensus size: 22

        861 ATAATAAATC

                 *           *    
        871 AAATATAT-TTAAAA-ACATAA
          1 AAATAAATATTAAAACAAATAA

                                  
        891 AAATAAATATTAAAACAAATAA
          1 AAATAAATATTAAAACAAATAA

                     *        
        913 AAAT-AATACTAAAACAA
          1 AAATAAATATTAAAACAA

        930 TTCTTAAAAC


Statistics
Matches: 34,  Mismatches: 3, Indels: 3
        0.85            0.08        0.08

Matches are distributed among these distances:
  20    7  0.21
  21   18  0.53
  22    9  0.26

ACGTcount: A:0.69, C:0.07, G:0.00, T:0.24


Consensus pattern (22 bp):   
AAATAAATATTAAAACAAATAA

Done.