Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga01g00006.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3524
ACGTcount: A:0.36, C:0.15, G:0.19, T:0.29


Found at i:1122 original size:42 final size:42

Alignment explanation


    Indices: 1063--1148  Score: 154
    Period size: 42  Copynumber: 2.0  Consensus size: 42

       1053 TTTATTTTGC

                        *                             
       1063 TCATTAATTAAATGATAGTTTGCAGGGATTACTTCCATTTCT
          1 TCATTAATTAAACGATAGTTTGCAGGGATTACTTCCATTTCT

                                 *                    
       1105 TCATTAATTAAACGATAGTTTTCAGGGATTACTTCCATTTCT
          1 TCATTAATTAAACGATAGTTTGCAGGGATTACTTCCATTTCT

              
       1147 TC
          1 TC

       1149 CTAAACTTTA


Statistics
Matches: 42,  Mismatches: 2, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
  42   42  1.00

ACGTcount: A:0.28, C:0.16, G:0.13, T:0.43


Consensus pattern (42 bp):   
TCATTAATTAAACGATAGTTTGCAGGGATTACTTCCATTTCT
Done.