Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga05g01347.P1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 751

Length: 1253
ACGTcount: A:0.29, C:0.18, G:0.21, T:0.32


Found at i:559 original size:71 final size:69

Alignment explanation


    Indices: 463--597  Score: 216
    Period size: 71  Copynumber: 1.9  Consensus size: 69

        453 CTTCCTCCAA

                                                         *        *          
        463 CTTTTCGTCAAGGAAGTGTTCGATAAAATGCTTCACTGATGAAAAGGAAAGGCCTTTCAAATTCT
          1 CTTTTCGTCAAGGAAGTGTTCGATAAAATGCTTCACTGATGAAAAAGAAA-GCCGTTCAAATTCT

                 
        528 TTCAT
         65 TTCAT

                     *                             *                         
        533 CTTTTCGTCGAGCGAAGTGTTCGATAAAATGCTTCACTGTTGAAAAAGAAAGCCGTTCAAATTCT
          1 CTTTTCGTCAAG-GAAGTGTTCGATAAAATGCTTCACTGATGAAAAAGAAAGCCGTTCAAATTCT

        598 AACGTTTGTG


Statistics
Matches: 60,  Mismatches: 4, Indels: 2
        0.91            0.06        0.03

Matches are distributed among these distances:
  70   24  0.40
  71   36  0.60

ACGTcount: A:0.31, C:0.18, G:0.19, T:0.32


Consensus pattern (69 bp):   
CTTTTCGTCAAGGAAGTGTTCGATAAAATGCTTCACTGATGAAAAAGAAAGCCGTTCAAATTCTT
TCAT
Done.