Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga05g01355.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3202
ACGTcount: A:0.30, C:0.19, G:0.21, T:0.30


Found at i:1710 original size:55 final size:55

Alignment explanation


    Indices: 1645--1753  Score: 218
    Period size: 55  Copynumber: 2.0  Consensus size: 55

       1635 CTCCAAGGCA

                                                                   
       1645 CCAACTCGTACAGCGGAAGACTTCTTATGTCAAAAAAAGCTTACAAAGAACCATT
          1 CCAACTCGTACAGCGGAAGACTTCTTATGTCAAAAAAAGCTTACAAAGAACCATT

                                                                  
       1700 CCAACTCGTACAGCGGAAGACTTCTTATGTCAAAAAAAGCTTACAAAGAACCAT
          1 CCAACTCGTACAGCGGAAGACTTCTTATGTCAAAAAAAGCTTACAAAGAACCAT

       1754 AGAAAGGGAT


Statistics
Matches: 54,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  55   54  1.00

ACGTcount: A:0.40, C:0.24, G:0.15, T:0.21


Consensus pattern (55 bp):   
CCAACTCGTACAGCGGAAGACTTCTTATGTCAAAAAAAGCTTACAAAGAACCATT
Done.