Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga05g01359.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 965

Length: 1609
ACGTcount: A:0.28, C:0.18, G:0.24, T:0.30


Found at i:790 original size:11 final size:11

Alignment explanation


    Indices: 769--797  Score: 51
    Period size: 11  Copynumber: 2.7  Consensus size: 11

        759 GGTTCTGTCA

                       
        769 TTCTC-TTCTT
          1 TTCTCTTTCTT

                       
        779 TTCTCTTTCTT
          1 TTCTCTTTCTT

                    
        790 TTCTCTTT
          1 TTCTCTTT

        798 TGCACCATCC


Statistics
Matches: 18,  Mismatches: 0, Indels: 1
        0.95            0.00        0.05

Matches are distributed among these distances:
  10    5  0.28
  11   13  0.72

ACGTcount: A:0.00, C:0.28, G:0.00, T:0.72


Consensus pattern (11 bp):   
TTCTCTTTCTT
Done.