Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga05g01359.F3

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3952
ACGTcount: A:0.25, C:0.20, G:0.24, T:0.31


Found at i:694 original size:11 final size:11

Alignment explanation


    Indices: 673--701  Score: 51
    Period size: 11  Copynumber: 2.7  Consensus size: 11

        663 GGTTCTGTCA

                       
        673 TTCTC-TTCTT
          1 TTCTCTTTCTT

                       
        683 TTCTCTTTCTT
          1 TTCTCTTTCTT

                    
        694 TTCTCTTT
          1 TTCTCTTT

        702 TGCACCATCC


Statistics
Matches: 18,  Mismatches: 0, Indels: 1
        0.95            0.00        0.05

Matches are distributed among these distances:
  10    5  0.28
  11   13  0.72

ACGTcount: A:0.00, C:0.28, G:0.00, T:0.72


Consensus pattern (11 bp):   
TTCTCTTTCTT

Found at i:1755 original size:37 final size:37

Alignment explanation


    Indices: 1714--1789  Score: 125
    Period size: 37  Copynumber: 2.1  Consensus size: 37

       1704 AATGGTTACC

                                                 
       1714 ATAAGTTGATTCATTAAGCAACAATGTTTGACTTTTA
          1 ATAAGTTGATTCATTAAGCAACAATGTTTGACTTTTA

                                *        * *     
       1751 ATAAGTTGATTCATTAAGCAGCAATGTTTTATTTTTA
          1 ATAAGTTGATTCATTAAGCAACAATGTTTGACTTTTA

              
       1788 AT
          1 AT

       1790 CATTCTTCTT


Statistics
Matches: 36,  Mismatches: 3, Indels: 0
        0.92            0.08        0.00

Matches are distributed among these distances:
  37   36  1.00

ACGTcount: A:0.34, C:0.09, G:0.13, T:0.43


Consensus pattern (37 bp):   
ATAAGTTGATTCATTAAGCAACAATGTTTGACTTTTA
Done.