Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga05g01361.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 520

Length: 867
ACGTcount: A:0.29, C:0.25, G:0.21, T:0.25


Found at i:37 original size:2 final size:2

Alignment explanation


    Indices: 19--65  Score: 76
    Period size: 2  Copynumber: 23.5  Consensus size: 2

          9 TACTAATTTC

                  *        *                                              
         19 CT CT TT CT CT TT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
          1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT

                   
         61 CT CT C
          1 CT CT C

         66 AAACCACAAA


Statistics
Matches: 41,  Mismatches: 4, Indels: 0
        0.91            0.09        0.00

Matches are distributed among these distances:
   2   41  1.00

ACGTcount: A:0.00, C:0.47, G:0.00, T:0.53


Consensus pattern (2 bp):   
CT

Done.