Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga05g01374.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 786

Length: 1311
ACGTcount: A:0.29, C:0.23, G:0.19, T:0.29


Found at i:27 original size:17 final size:17

Alignment explanation


    Indices: 5--40  Score: 63
    Period size: 17  Copynumber: 2.1  Consensus size: 17

          1 TACT

                     *       
          5 AACCCACTTGTAAACAA
          1 AACCCACTTCTAAACAA

                             
         22 AACCCACTTCTAAACAA
          1 AACCCACTTCTAAACAA

              
         39 AA
          1 AA

         41 ATGGATGGTT


Statistics
Matches: 18,  Mismatches: 1, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
  17   18  1.00

ACGTcount: A:0.50, C:0.31, G:0.03, T:0.17


Consensus pattern (17 bp):   
AACCCACTTCTAAACAA
Done.