Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga05g01380.F5

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4344
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28


Found at i:4132 original size:25 final size:25

Alignment explanation


    Indices: 4104--4161  Score: 91
    Period size: 25  Copynumber: 2.4  Consensus size: 25

       4094 AATTTGATAT

                 *                   
       4104 TTCAGTAAAGAAGGCATTGTTGAGA
          1 TTCAGCAAAGAAGGCATTGTTGAGA

                   *                 
       4129 TTCAGCAGAGAAGGCATTGTTGAGA
          1 TTCAGCAAAGAAGGCATTGTTGAGA

                     
       4154 TTC-GCAAA
          1 TTCAGCAAA

       4162 CTCAATAAAT


Statistics
Matches: 30,  Mismatches: 3, Indels: 1
        0.88            0.09        0.03

Matches are distributed among these distances:
  24    4  0.13
  25   26  0.87

ACGTcount: A:0.34, C:0.12, G:0.28, T:0.26


Consensus pattern (25 bp):   
TTCAGCAAAGAAGGCATTGTTGAGA
Done.