Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga05g01389.F5

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2336
ACGTcount: A:0.29, C:0.19, G:0.23, T:0.28


Found at i:752 original size:14 final size:15

Alignment explanation


    Indices: 726--754  Score: 51
    Period size: 14  Copynumber: 2.0  Consensus size: 15

        716 TCAAGTTTTG

                           
        726 GAAGGTACAAGAAAA
          1 GAAGGTACAAGAAAA

                           
        741 GAAGGT-CAAGAAAA
          1 GAAGGTACAAGAAAA

        755 TTTCAGACAT


Statistics
Matches: 14,  Mismatches: 0, Indels: 1
        0.93            0.00        0.07

Matches are distributed among these distances:
  14    8  0.57
  15    6  0.43

ACGTcount: A:0.59, C:0.07, G:0.28, T:0.07


Consensus pattern (15 bp):   
GAAGGTACAAGAAAA
Done.