Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga05g01412.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 892

Length: 1487
ACGTcount: A:0.30, C:0.23, G:0.18, T:0.30


Found at i:1236 original size:2 final size:2

Alignment explanation


    Indices: 1229--1262  Score: 50
    Period size: 2  Copynumber: 17.0  Consensus size: 2

       1219 ATATGCACAG

                                                *     *       
       1229 AT AT AT AT AT AT AT AT AT AT AT AT TT AT GT AT AT
          1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT

       1263 TGAAGGGTTC


Statistics
Matches: 28,  Mismatches: 4, Indels: 0
        0.88            0.12        0.00

Matches are distributed among these distances:
   2   28  1.00

ACGTcount: A:0.44, C:0.00, G:0.03, T:0.53


Consensus pattern (2 bp):   
AT

Done.