Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga05g01416.F5

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3921
ACGTcount: A:0.30, C:0.18, G:0.21, T:0.32


Found at i:70 original size:21 final size:21

Alignment explanation


    Indices: 31--70  Score: 53
    Period size: 21  Copynumber: 1.9  Consensus size: 21

         21 CGCCCCTCGG

                 *        *      
         31 TTTTTTTTTCCATTGTTTTTC
          1 TTTTTCTTTCCATTATTTTTC

                       *       
         52 TTTTTCTTTCCTTTATTTT
          1 TTTTTCTTTCCATTATTTT

         71 ACTTGCTTTT


Statistics
Matches: 16,  Mismatches: 3, Indels: 0
        0.84            0.16        0.00

Matches are distributed among these distances:
  21   16  1.00

ACGTcount: A:0.05, C:0.15, G:0.03, T:0.78


Consensus pattern (21 bp):   
TTTTTCTTTCCATTATTTTTC
Done.