Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga05g01430.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1723
ACGTcount: A:0.29, C:0.23, G:0.21, T:0.28


Found at i:352 original size:5 final size:5

Alignment explanation


    Indices: 342--367  Score: 52
    Period size: 5  Copynumber: 5.2  Consensus size: 5

        332 GTTTCTTCCC

                                           
        342 TCTTT TCTTT TCTTT TCTTT TCTTT T
          1 TCTTT TCTTT TCTTT TCTTT TCTTT T

        368 TTCCTTTATT


Statistics
Matches: 21,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   5   21  1.00

ACGTcount: A:0.00, C:0.19, G:0.00, T:0.81


Consensus pattern (5 bp):   
TCTTT

Done.