Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Ga05g01456.N2
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 2463
ACGTcount: A:0.32, C:0.14, G:0.22, T:0.32
Found at i:1023 original size:172 final size:173
Alignment explanation
Indices: 737--1088 Score: 697
Period size: 172 Copynumber: 2.0 Consensus size: 173
727 ACTTAATTCG
737 GAGTTTCGTAGCTCCAGATATAAATAATTTAGTGACTGTTGCTCAGAAAGACAGCTTGTAGTGAA
1 GAGTTTCGTAGCTCCAGATATAAATAATTTAGTGACTGTTGCTCAGAAAGACAGCTTGTAGTGAA
802 CTTGAAAATATGTTGTAAACATTGATAAAACAAGTTAATGAGTTGCTTATTGTTTTCATATGAAC
66 CTTGAAAATATGTTGTAAACATTGATAAAACAAGTTAATGAGTTGCTTATTGTTTTCATATGAAC
867 TTACTAAGCGAAAGCTTA-CCCCCTTCTTTCCCATGTTTTCTA
131 TTACTAAGCGAAAGCTTACCCCCCTTCTTTCCCATGTTTTCTA
909 GAGTTTCGTAGCTCCAGATATAAATAATTTAGTGACTGTTGCTCAGAAAGACAGCTTGTAGTGAA
1 GAGTTTCGTAGCTCCAGATATAAATAATTTAGTGACTGTTGCTCAGAAAGACAGCTTGTAGTGAA
974 CTTGAAAATATGTTGTAAACATTGATAAAACAAGTTAATGAGTTGCTTATTGTTTTCATATGAAC
66 CTTGAAAATATGTTGTAAACATTGATAAAACAAGTTAATGAGTTGCTTATTGTTTTCATATGAAC
1039 TTACTAAGCGAAAGCTTACCCCCCTTCTTTCCCATGTTTTCTA
131 TTACTAAGCGAAAGCTTACCCCCCTTCTTTCCCATGTTTTCTA
1082 GAGTTTC
1 GAGTTTC
1089 CAGGTTAGCT
Statistics
Matches: 179, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
172 148 0.83
173 31 0.17
ACGTcount: A:0.31, C:0.16, G:0.17, T:0.36
Consensus pattern (173 bp):
GAGTTTCGTAGCTCCAGATATAAATAATTTAGTGACTGTTGCTCAGAAAGACAGCTTGTAGTGAA
CTTGAAAATATGTTGTAAACATTGATAAAACAAGTTAATGAGTTGCTTATTGTTTTCATATGAAC
TTACTAAGCGAAAGCTTACCCCCCTTCTTTCCCATGTTTTCTA
Done.