Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga05g01461.P2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2333
ACGTcount: A:0.32, C:0.12, G:0.22, T:0.33


Found at i:952 original size:47 final size:46

Alignment explanation


    Indices: 898--1074  Score: 218
    Period size: 47  Copynumber: 3.8  Consensus size: 46

        888 TGGTTGAGCA

                                                           
        898 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGGAATG
          1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGT-GAATG

                                          * *                
        945 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGT-AACTAGG
          1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAA-T--G

                                                      *   * 
        990 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
          1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAATG

            *    *                               
       1038 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
          1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG

       1075 GCGGGTTACA


Statistics
Matches: 113,  Mismatches: 8, Indels: 19
        0.81            0.06        0.14

Matches are distributed among these distances:
  42    2  0.02
  43    1  0.01
  44    5  0.04
  45    1  0.01
  46   37  0.33
  47   58  0.51
  48    3  0.03
  50    4  0.04
  51    2  0.02

ACGTcount: A:0.21, C:0.20, G:0.29, T:0.29


Consensus pattern (46 bp):   
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAATG
Done.