Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga05g01465.F3

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2144
ACGTcount: A:0.30, C:0.19, G:0.20, T:0.31


Found at i:1698 original size:40 final size:40

Alignment explanation


    Indices: 1643--1719  Score: 154
    Period size: 40  Copynumber: 1.9  Consensus size: 40

       1633 GGCACTCTTT

                                                    
       1643 CTAAGGCTTTATTTAGGTAAACAACAAACAAGTAATCATG
          1 CTAAGGCTTTATTTAGGTAAACAACAAACAAGTAATCATG

                                                 
       1683 CTAAGGCTTTATTTAGGTAAACAACAAACAAGTAATC
          1 CTAAGGCTTTATTTAGGTAAACAACAAACAAGTAATC

       1720 TTGTTGAGAT


Statistics
Matches: 37,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  40   37  1.00

ACGTcount: A:0.43, C:0.16, G:0.14, T:0.27


Consensus pattern (40 bp):   
CTAAGGCTTTATTTAGGTAAACAACAAACAAGTAATCATG
Done.