Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga05g01466.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 777

Length: 1295
ACGTcount: A:0.31, C:0.18, G:0.20, T:0.30


Found at i:1189 original size:40 final size:40

Alignment explanation


    Indices: 1134--1210  Score: 154
    Period size: 40  Copynumber: 1.9  Consensus size: 40

       1124 ATCTCAACAA

                                                    
       1134 GATTACTTGTTTGTTGTTTACCTAAATAAAGCCTTAGCAT
          1 GATTACTTGTTTGTTGTTTACCTAAATAAAGCCTTAGCAT

                                                 
       1174 GATTACTTGTTTGTTGTTTACCTAAATAAAGCCTTAG
          1 GATTACTTGTTTGTTGTTTACCTAAATAAAGCCTTAG

       1211 AAAGAGTGCC


Statistics
Matches: 37,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  40   37  1.00

ACGTcount: A:0.27, C:0.14, G:0.16, T:0.43


Consensus pattern (40 bp):   
GATTACTTGTTTGTTGTTTACCTAAATAAAGCCTTAGCAT
Done.