Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga05g01477.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1918
ACGTcount: A:0.24, C:0.21, G:0.20, T:0.35


Found at i:1355 original size:6 final size:6

Alignment explanation


    Indices: 1341--1371  Score: 53
    Period size: 6  Copynumber: 5.2  Consensus size: 6

       1331 GAAGAGGGTT

                *                               
       1341 CATCGG CATCAG CATCAG CATCAG CATCAG C
          1 CATCAG CATCAG CATCAG CATCAG CATCAG C

       1372 TTCTGGTGCT


Statistics
Matches: 24,  Mismatches: 1, Indels: 0
        0.96            0.04        0.00

Matches are distributed among these distances:
   6   24  1.00

ACGTcount: A:0.29, C:0.35, G:0.19, T:0.16


Consensus pattern (6 bp):   
CATCAG

Done.