Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga05g01493.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 438

Length: 730
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28


Found at i:93 original size:2 final size:2

Alignment explanation


    Indices: 86--115  Score: 60
    Period size: 2  Copynumber: 15.0  Consensus size: 2

         76 CCGTTAGATC

                                                        
         86 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
          1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG

        116 GGTGGAGATT


Statistics
Matches: 28,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   2   28  1.00

ACGTcount: A:0.50, C:0.00, G:0.50, T:0.00


Consensus pattern (2 bp):   
AG

Found at i:544 original size:3 final size:3

Alignment explanation


    Indices: 536--578  Score: 50
    Period size: 3  Copynumber: 14.3  Consensus size: 3

        526 GCATACTTCC

                         *       *   *            *                  
        536 TAA TAA TAA TGA TAA TGA TGA TAA TAA TAG TAA TAA TAA TAA T
          1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA T

        579 GTGTTCCTAC


Statistics
Matches: 34,  Mismatches: 6, Indels: 0
        0.85            0.15        0.00

Matches are distributed among these distances:
   3   34  1.00

ACGTcount: A:0.56, C:0.00, G:0.09, T:0.35


Consensus pattern (3 bp):   
TAA

Done.