Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga05g01498.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 358

Length: 597
ACGTcount: A:0.26, C:0.21, G:0.19, T:0.35


Found at i:89 original size:21 final size:21

Alignment explanation


    Indices: 50--90  Score: 55
    Period size: 21  Copynumber: 2.0  Consensus size: 21

         40 CCACAAGAAA

                    *   * *      
         50 CCTCTTTATAAATATATTTCT
          1 CCTCTTTACAAAGAGATTTCT

                                
         71 CCTCTTTACAAAGAGATTTC
          1 CCTCTTTACAAAGAGATTTC

         91 ATAGGGAAAA


Statistics
Matches: 17,  Mismatches: 3, Indels: 0
        0.85            0.15        0.00

Matches are distributed among these distances:
  21   17  1.00

ACGTcount: A:0.29, C:0.22, G:0.05, T:0.44


Consensus pattern (21 bp):   
CCTCTTTACAAAGAGATTTCT
Done.