Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga01g01111.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 200

Length: 225
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.34


Found at i:110 original size:46 final size:46

Alignment explanation


    Indices: 43--133  Score: 182
    Period size: 46  Copynumber: 2.0  Consensus size: 46

         33 CTGGAATTCA

                                                          
         43 ATCAATAAAACGATTAATGAATTTGTTCCTTTGAAGAAAACAATGC
          1 ATCAATAAAACGATTAATGAATTTGTTCCTTTGAAGAAAACAATGC

                                                         
         89 ATCAATAAAACGATTAATGAATTTGTTCCTTTGAAGAAAACAATG
          1 ATCAATAAAACGATTAATGAATTTGTTCCTTTGAAGAAAACAATG

        134 TTAAAAGGAG


Statistics
Matches: 45,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  46   45  1.00

ACGTcount: A:0.44, C:0.12, G:0.13, T:0.31


Consensus pattern (46 bp):   
ATCAATAAAACGATTAATGAATTTGTTCCTTTGAAGAAAACAATGC
Done.