Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga05g01524.F13

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4599
ACGTcount: A:0.27, C:0.20, G:0.22, T:0.31


Found at i:1596 original size:10 final size:11

Alignment explanation


    Indices: 1580--1609  Score: 53
    Period size: 10  Copynumber: 2.8  Consensus size: 11

       1570 TAATTCTCAA

                       
       1580 AAAAAGAAAAG
          1 AAAAAGAAAAG

                       
       1591 -AAAAGAAAAG
          1 AAAAAGAAAAG

                     
       1601 AAAAAGAAA
          1 AAAAAGAAA

       1610 GTGGTTTCCC


Statistics
Matches: 18,  Mismatches: 0, Indels: 2
        0.90            0.00        0.10

Matches are distributed among these distances:
  10   10  0.56
  11    8  0.44

ACGTcount: A:0.83, C:0.00, G:0.17, T:0.00


Consensus pattern (11 bp):   
AAAAAGAAAAG
Done.