Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga05g01533.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2943
ACGTcount: A:0.29, C:0.19, G:0.22, T:0.30


Found at i:1108 original size:2 final size:2

Alignment explanation


    Indices: 1101--1131  Score: 62
    Period size: 2  Copynumber: 15.5  Consensus size: 2

       1091 AGGCTTAAAC

                                                          
       1101 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA G
          1 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA G

       1132 GGGGAGGGGA


Statistics
Matches: 29,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   2   29  1.00

ACGTcount: A:0.48, C:0.00, G:0.52, T:0.00


Consensus pattern (2 bp):   
GA

Done.