Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga05g01553.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1897
ACGTcount: A:0.29, C:0.21, G:0.26, T:0.24


Found at i:1880 original size:7 final size:7

Alignment explanation


    Indices: 1868--1897  Score: 60
    Period size: 7  Copynumber: 4.3  Consensus size: 7

       1858 TTAATGGTAT

                   
       1868 TGGTGAA
          1 TGGTGAA

                   
       1875 TGGTGAA
          1 TGGTGAA

                   
       1882 TGGTGAA
          1 TGGTGAA

                   
       1889 TGGTGAA
          1 TGGTGAA

              
       1896 TG
          1 TG


Statistics
Matches: 23,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   7   23  1.00

ACGTcount: A:0.27, C:0.00, G:0.43, T:0.30


Consensus pattern (7 bp):   
TGGTGAA

Done.