Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga01g00113.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1940
ACGTcount: A:0.27, C:0.20, G:0.22, T:0.31


Found at i:49 original size:21 final size:22

Alignment explanation


    Indices: 23--64  Score: 61
    Period size: 21  Copynumber: 2.0  Consensus size: 22

         13 TGGCTTCACT

                                   
         23 GGAAGTAGAAG-AAAA-GCCATC
          1 GGAAGTA-AAGCAAAATGCCATC

                                 
         44 GGAAGTAAAGCAAAATGCCAT
          1 GGAAGTAAAGCAAAATGCCAT

         65 ATGGGGTGAA


Statistics
Matches: 19,  Mismatches: 0, Indels: 3
        0.86            0.00        0.14

Matches are distributed among these distances:
  20    3  0.16
  21   11  0.58
  22    5  0.26

ACGTcount: A:0.48, C:0.14, G:0.26, T:0.12


Consensus pattern (22 bp):   
GGAAGTAAAGCAAAATGCCATC
Done.