Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga05g01572.N13

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3530
ACGTcount: A:0.28, C:0.19, G:0.21, T:0.32


Found at i:2686 original size:29 final size:29

Alignment explanation


    Indices: 2638--2697  Score: 93
    Period size: 29  Copynumber: 2.1  Consensus size: 29

       2628 TTTTTAGCTT

                                         
       2638 ATATGATAGGTGTGCCTAGGACTGTTTGG
          1 ATATGATAGGTGTGCCTAGGACTGTTTGG

                       *   *    *        
       2667 ATATGATAGGTTTGCTTAGGTCTGTTTGG
          1 ATATGATAGGTGTGCCTAGGACTGTTTGG

              
       2696 AT
          1 AT

       2698 TTAATGTATT


Statistics
Matches: 28,  Mismatches: 3, Indels: 0
        0.90            0.10        0.00

Matches are distributed among these distances:
  29   28  1.00

ACGTcount: A:0.20, C:0.08, G:0.32, T:0.40


Consensus pattern (29 bp):   
ATATGATAGGTGTGCCTAGGACTGTTTGG
Done.