Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga05g01572.N16

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4308
ACGTcount: A:0.27, C:0.18, G:0.21, T:0.34


Found at i:593 original size:11 final size:12

Alignment explanation


    Indices: 570--594  Score: 50
    Period size: 12  Copynumber: 2.1  Consensus size: 12

        560 AATAATAATA

                        
        570 TTTGGGTTTTTT
          1 TTTGGGTTTTTT

                        
        582 TTTGGGTTTTTT
          1 TTTGGGTTTTTT

             
        594 T
          1 T

        595 GTTAATTCTA


Statistics
Matches: 13,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  12   13  1.00

ACGTcount: A:0.00, C:0.00, G:0.24, T:0.76


Consensus pattern (12 bp):   
TTTGGGTTTTTT
Done.