Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga05g01578.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 887

Length: 1479
ACGTcount: A:0.32, C:0.17, G:0.26, T:0.26


Found at i:36 original size:2 final size:2

Alignment explanation


    Indices: 29--88  Score: 120
    Period size: 2  Copynumber: 30.0  Consensus size: 2

         19 AAATAGGCAC

                                                                          
         29 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
          1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG

                                      
         71 AG AG AG AG AG AG AG AG AG
          1 AG AG AG AG AG AG AG AG AG

         89 GGGATATTAG


Statistics
Matches: 58,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   2   58  1.00

ACGTcount: A:0.50, C:0.00, G:0.50, T:0.00


Consensus pattern (2 bp):   
AG

Done.