Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga01g01118.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 678

Length: 1131
ACGTcount: A:0.30, C:0.22, G:0.21, T:0.26


Found at i:636 original size:15 final size:15

Alignment explanation


    Indices: 616--646  Score: 62
    Period size: 15  Copynumber: 2.1  Consensus size: 15

        606 CACAAATCAT

                           
        616 TGAAGAAGAAGATGA
          1 TGAAGAAGAAGATGA

                           
        631 TGAAGAAGAAGATGA
          1 TGAAGAAGAAGATGA

             
        646 T
          1 T

        647 AATGACGATC


Statistics
Matches: 16,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  15   16  1.00

ACGTcount: A:0.52, C:0.00, G:0.32, T:0.16


Consensus pattern (15 bp):   
TGAAGAAGAAGATGA
Done.