Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga05g01581.F3

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2109
ACGTcount: A:0.30, C:0.18, G:0.25, T:0.27


Found at i:85 original size:16 final size:17

Alignment explanation


    Indices: 64--102  Score: 55
    Period size: 16  Copynumber: 2.4  Consensus size: 17

         54 TCACTCTCTC

                             
         64 TTCTCTTCTC-GCTTTT
          1 TTCTCTTCTCTGCTTTT

                       *     
         80 TTCTC-TCTCTTCTTTT
          1 TTCTCTTCTCTGCTTTT

                   
         96 TTCTCTT
          1 TTCTCTT

        103 TTCTAAAATC


Statistics
Matches: 20,  Mismatches: 1, Indels: 3
        0.83            0.04        0.12

Matches are distributed among these distances:
  15    4  0.20
  16   15  0.75
  17    1  0.05

ACGTcount: A:0.00, C:0.31, G:0.03, T:0.67


Consensus pattern (17 bp):   
TTCTCTTCTCTGCTTTT
Done.