Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga05g01586.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 860

Length: 1434
ACGTcount: A:0.27, C:0.20, G:0.22, T:0.30


Found at i:47 original size:20 final size:20

Alignment explanation


    Indices: 22--61  Score: 71
    Period size: 20  Copynumber: 2.0  Consensus size: 20

         12 TAACCCATTA

                      *         
         22 CTTACTCCCAGAGGCTTACT
          1 CTTACTCCCACAGGCTTACT

                                
         42 CTTACTCCCACAGGCTTACT
          1 CTTACTCCCACAGGCTTACT

         62 TATTCTCACA


Statistics
Matches: 19,  Mismatches: 1, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
  20   19  1.00

ACGTcount: A:0.20, C:0.38, G:0.12, T:0.30


Consensus pattern (20 bp):   
CTTACTCCCACAGGCTTACT
Done.