Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga05g01590.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5270
ACGTcount: A:0.32, C:0.15, G:0.19, T:0.34


Found at i:4889 original size:39 final size:39

Alignment explanation


    Indices: 4846--5090  Score: 420
    Period size: 39  Copynumber: 6.3  Consensus size: 39

       4836 ATGCAAGACA

                                                   
       4846 CTGGAAATATATCCGGGCTAAAGTCCCGCAGGCTTCGTG
          1 CTGGAAATATATCCGGGCTAAAGTCCCGCAGGCTTCGTG

                    *                              
       4885 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
          1 CTGGAAATATATCCGGGCTAAAGTCCCGCAGGCTTCGTG

                                                   
       4924 CTGGAAATATATCCGGGCTAAAGTCCCGCAGGCTTCGTG
          1 CTGGAAATATATCCGGGCTAAAGTCCCGCAGGCTTCGTG

                    *                              
       4963 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
          1 CTGGAAATATATCCGGGCTAAAGTCCCGCAGGCTTCGTG

                              *                    
       5002 CTGGAAATATATCCGGGCCAAAGTCCCGCAGGCTTCGTG
          1 CTGGAAATATATCCGGGCTAAAGTCCCGCAGGCTTCGTG

                    *        *                 *   
       5041 CTGGAAATGTATCCGGGTTAAAGTCCCGCAGGCTTTGTG
          1 CTGGAAATATATCCGGGCTAAAGTCCCGCAGGCTTCGTG

                        
       5080 CT-GATAATATA
          1 CTGGA-AATATA

       5091 ATTTCGGGTT


Statistics
Matches: 195,  Mismatches: 10, Indels: 2
        0.94            0.05        0.01

Matches are distributed among these distances:
  38    2  0.01
  39  193  0.99

ACGTcount: A:0.23, C:0.24, G:0.29, T:0.24


Consensus pattern (39 bp):   
CTGGAAATATATCCGGGCTAAAGTCCCGCAGGCTTCGTG

Done.