Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga01g01122.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 953

Length: 1589
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.29


Found at i:1557 original size:3 final size:3

Alignment explanation


    Indices: 1549--1579  Score: 62
    Period size: 3  Copynumber: 10.3  Consensus size: 3

       1539 TTGTATTTCC

                                                     
       1549 GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT G
          1 GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT G

       1580 TTTCTTTTTG


Statistics
Matches: 28,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   3   28  1.00

ACGTcount: A:0.32, C:0.00, G:0.35, T:0.32


Consensus pattern (3 bp):   
GAT

Done.