Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga05g01634.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2700
ACGTcount: A:0.27, C:0.20, G:0.22, T:0.30


Found at i:1546 original size:113 final size:114

Alignment explanation


    Indices: 1341--1559  Score: 422
    Period size: 113  Copynumber: 1.9  Consensus size: 114

       1331 GAAGCATGGG

                                                                      *      
       1341 AATGACGAGCCTCTGAGAGTCAATGTTCTTTTTAAGCACATTCAGGTAGGCACTCGGGTCATGAC
          1 AATGACGAGCCTCTGAGAGTCAATGTTCTTTTTAAGCACATTCAGGTAGGCACTCGGGACATGAC

                                                             
       1406 TTGAAATACTCCTCTATAATATTTTAGCTTATAATATAGATACTCCTCT
         66 TTGAAATACTCCTCTATAATATTTTAGCTTATAATATAGATACTCCTCT

                                                                             
       1455 AATGAC-AGCCTCTGAGAGTCAATGTTCTTTTTAAGCACATTCAGGTAGGCACTCGGGACATGAC
          1 AATGACGAGCCTCTGAGAGTCAATGTTCTTTTTAAGCACATTCAGGTAGGCACTCGGGACATGAC

                                                     
       1519 TTGAAATACTCCTCTATAATATTTTAGCTTATAATATAGAT
         66 TTGAAATACTCCTCTATAATATTTTAGCTTATAATATAGAT

       1560 TTCTTGATGG


Statistics
Matches: 104,  Mismatches: 1, Indels: 1
        0.98            0.01        0.01

Matches are distributed among these distances:
 113   98  0.94
 114    6  0.06

ACGTcount: A:0.30, C:0.19, G:0.17, T:0.34


Consensus pattern (114 bp):   
AATGACGAGCCTCTGAGAGTCAATGTTCTTTTTAAGCACATTCAGGTAGGCACTCGGGACATGAC
TTGAAATACTCCTCTATAATATTTTAGCTTATAATATAGATACTCCTCT
Done.