Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga05g01645.C1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2237
ACGTcount: A:0.31, C:0.18, G:0.19, T:0.32


Found at i:1254 original size:25 final size:23

Alignment explanation


    Indices: 1213--1264  Score: 59
    Period size: 25  Copynumber: 2.2  Consensus size: 23

       1203 CATTAGATCA

                             *     
       1213 AAAAATAAATTAGTTCTTCTCTT
          1 AAAAATAAATTAGTTCTACTCTT

                          *       *  
       1236 AAAAATACAATCTATTTCTACTGTT
          1 AAAAATA-AAT-TAGTTCTACTCTT

                
       1261 AAAA
          1 AAAA

       1265 TTTGGTTATT


Statistics
Matches: 24,  Mismatches: 3, Indels: 2
        0.83            0.10        0.07

Matches are distributed among these distances:
  23    7  0.29
  24    3  0.12
  25   14  0.58

ACGTcount: A:0.44, C:0.13, G:0.04, T:0.38


Consensus pattern (23 bp):   
AAAAATAAATTAGTTCTACTCTT
Done.