Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga05g01653.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 309

Length: 515
ACGTcount: A:0.27, C:0.22, G:0.20, T:0.31


Found at i:512 original size:31 final size:31

Alignment explanation


    Indices: 447--512  Score: 77
    Period size: 31  Copynumber: 2.2  Consensus size: 31

        437 AGTACGCATA

                                *          
        447 CTATTTT--TTATCAGTTTGGCCTCTGTATT
          1 CTATTTTGGTTATCAGTTTGCCCTCTGTATT

                                             
        476 CTATTTTGGTTATCAGTTTAGCCCT-TGTACTT
          1 CTATTTTGGTTATCAGTTT-GCCCTCTGTA-TT

                  
        508 -TATTT
          1 CTATTT

        513 CGT


Statistics
Matches: 32,  Mismatches: 1, Indels: 6
        0.82            0.03        0.15

Matches are distributed among these distances:
  29    7  0.22
  31   19  0.59
  32    6  0.19

ACGTcount: A:0.15, C:0.17, G:0.14, T:0.55


Consensus pattern (31 bp):   
CTATTTTGGTTATCAGTTTGCCCTCTGTATT
Done.