Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga05g01668.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3230
ACGTcount: A:0.29, C:0.20, G:0.22, T:0.28


Found at i:2438 original size:5 final size:5

Alignment explanation


    Indices: 2428--2461  Score: 68
    Period size: 5  Copynumber: 6.8  Consensus size: 5

       2418 TAAGAAAAGC

                                                    
       2428 AGAGA AGAGA AGAGA AGAGA AGAGA AGAGA AGAG
          1 AGAGA AGAGA AGAGA AGAGA AGAGA AGAGA AGAG

       2462 GTTTTGTCAA


Statistics
Matches: 29,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   5   29  1.00

ACGTcount: A:0.59, C:0.00, G:0.41, T:0.00


Consensus pattern (5 bp):   
AGAGA

Done.