Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga05g01669.P1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2694
ACGTcount: A:0.29, C:0.17, G:0.21, T:0.34


Found at i:460 original size:15 final size:14

Alignment explanation


    Indices: 440--481  Score: 57
    Period size: 15  Copynumber: 2.9  Consensus size: 14

        430 ATGATTCCAA

                           
        440 TGGAATGTGATTCGC
          1 TGGAATGTGATT-GC

                  *       
        455 TGGAATATGATTGC
          1 TGGAATGTGATTGC

                         
        469 TGGGAATGTGATT
          1 T-GGAATGTGATT

        482 ACTGAGGAAG


Statistics
Matches: 24,  Mismatches: 2, Indels: 2
        0.86            0.07        0.07

Matches are distributed among these distances:
  14    3  0.12
  15   21  0.88

ACGTcount: A:0.24, C:0.07, G:0.33, T:0.36


Consensus pattern (14 bp):   
TGGAATGTGATTGC
Done.