Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga01g01134.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3703
ACGTcount: A:0.28, C:0.19, G:0.23, T:0.30


Found at i:140 original size:2 final size:2

Alignment explanation


    Indices: 133--157  Score: 50
    Period size: 2  Copynumber: 12.5  Consensus size: 2

        123 TCTTTTGGGG

                                                 
        133 GA GA GA GA GA GA GA GA GA GA GA GA G
          1 GA GA GA GA GA GA GA GA GA GA GA GA G

        158 GCTACTCAAA


Statistics
Matches: 23,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   2   23  1.00

ACGTcount: A:0.48, C:0.00, G:0.52, T:0.00


Consensus pattern (2 bp):   
GA

Found at i:289 original size:23 final size:24

Alignment explanation


    Indices: 261--305  Score: 65
    Period size: 24  Copynumber: 1.9  Consensus size: 24

        251 AGAAAAGATC

                                    
        261 TTTCTTTCCA-GTGTTTGTTCCCT
          1 TTTCTTTCCAGGTGTTTGTTCCCT

                   *     *        
        284 TTTCTTTGCAGGTTTTTGTTCC
          1 TTTCTTTCCAGGTGTTTGTTCC

        306 TTGATTTTGG


Statistics
Matches: 19,  Mismatches: 2, Indels: 1
        0.86            0.09        0.05

Matches are distributed among these distances:
  23    9  0.47
  24   10  0.53

ACGTcount: A:0.04, C:0.22, G:0.16, T:0.58


Consensus pattern (24 bp):   
TTTCTTTCCAGGTGTTTGTTCCCT

Done.