Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga05g01678.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1822
ACGTcount: A:0.28, C:0.19, G:0.22, T:0.31


Found at i:1454 original size:7 final size:7

Alignment explanation


    Indices: 1442--1467  Score: 52
    Period size: 7  Copynumber: 3.7  Consensus size: 7

       1432 ATCATCTCCT

                   
       1442 TCATCAC
          1 TCATCAC

                   
       1449 TCATCAC
          1 TCATCAC

                   
       1456 TCATCAC
          1 TCATCAC

                 
       1463 TCATC
          1 TCATC

       1468 TGAAAGCAGC


Statistics
Matches: 19,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   7   19  1.00

ACGTcount: A:0.27, C:0.42, G:0.00, T:0.31


Consensus pattern (7 bp):   
TCATCAC
Done.