Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga05g01682.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2903
ACGTcount: A:0.30, C:0.19, G:0.20, T:0.30


Found at i:2769 original size:13 final size:13

Alignment explanation


    Indices: 2751--2779  Score: 58
    Period size: 13  Copynumber: 2.2  Consensus size: 13

       2741 ATTTACAACC

                         
       2751 AAAGGTAGAGAAA
          1 AAAGGTAGAGAAA

                         
       2764 AAAGGTAGAGAAA
          1 AAAGGTAGAGAAA

               
       2777 AAA
          1 AAA

       2780 TGAGATACAA


Statistics
Matches: 16,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  13   16  1.00

ACGTcount: A:0.66, C:0.00, G:0.28, T:0.07


Consensus pattern (13 bp):   
AAAGGTAGAGAAA
Done.