Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga05g01687.F4

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2236
ACGTcount: A:0.30, C:0.18, G:0.23, T:0.29


Found at i:21 original size:4 final size:4

Alignment explanation


    Indices: 1--49  Score: 55
    Period size: 4  Copynumber: 12.2  Consensus size: 4

                      *    *                      *                     
          1 AAGA AAGA GAGA TAGA AAGA AAGA AAGA AAGG AAGA AAGA GAA-A AAGA
          1 AAGA AAGA AAGA AAGA AAGA AAGA AAGA AAGA AAGA AAGA -AAGA AAGA

             
         49 A
          1 A

         50 CCCTCCCAGA


Statistics
Matches: 38,  Mismatches: 5, Indels: 4
        0.81            0.11        0.09

Matches are distributed among these distances:
   3    2  0.05
   4   34  0.89
   5    2  0.05

ACGTcount: A:0.69, C:0.00, G:0.29, T:0.02


Consensus pattern (4 bp):   
AAGA

Done.