Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga05g01694.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 722

Length: 1204
ACGTcount: A:0.23, C:0.22, G:0.19, T:0.36


Found at i:297 original size:176 final size:177

Alignment explanation


    Indices: 1--327  Score: 471
    Period size: 176  Copynumber: 1.8  Consensus size: 177

                                *   *           *  **  *                  *  
          1 GCCCCTCTTCTCTCCCTCGTCTCTGCAAATCAGTTTTTTTTTTTTCTTCTCATCTCAGTTCTCGC
          1 GCCCCTCTTCTCTCCCTCGTATCTACAAATCAGTTTCTTCATTCTCTTCTCATCTCAGTTCTAGC

                                    * *                                *     
         66 CCACCGCCGTCTCCGCTGATTTTTTCTGGATCTGACCCGTATTCCGTGTCGGATCGTGTTGACAC
         66 CCACCGCCG-CTCCGCTGATTTTTGCCGGATCTGACCCGTATTCCGTGTCGGATCGTGTCGACAC

             *                                              
        131 AGGTACTGCACCCCAAATTGCCGAGTCAGGGTAACGAAGCTTACCATC
        130 AAGTACTGCACCCCAAATTGCCGAGTCAGGGTAACGAAGCTTACCATC

                          *                                                  
        179 GCCCCTCTTCTCTCTCTCGTATCTACAAATCAGGTTTCTTCATTCTCTTCTCATCTCAGTTCTAG
          1 GCCCCTCTTCTCTCCCTCGTATCTACAAATCA-GTTTCTTCATTCTCTTCTCATCTCAGTTCTAG

                              *                   *                          
        244 CCCACCG-C-CTCCGCTGGTTTTTGCCGGATCTGACCCTTA-TCGCGTGTCGGATCGTGTCGACA
         65 CCCACCGCCGCTCCGCTGATTTTTGCCGGATCTGACCCGTATTC-CGTGTCGGATCGTGTCGACA

                       *          
        306 CAAGTACTGCATCCCAAATTGC
        129 CAAGTACTGCACCCCAAATTGC

        328 TCCGAGCCCG


Statistics
Matches: 132,  Mismatches: 15, Indels: 6
        0.86            0.10        0.04

Matches are distributed among these distances:
 175    2  0.02
 176   66  0.50
 178   30  0.23
 179   34  0.26

ACGTcount: A:0.16, C:0.33, G:0.17, T:0.33


Consensus pattern (177 bp):   
GCCCCTCTTCTCTCCCTCGTATCTACAAATCAGTTTCTTCATTCTCTTCTCATCTCAGTTCTAGC
CCACCGCCGCTCCGCTGATTTTTGCCGGATCTGACCCGTATTCCGTGTCGGATCGTGTCGACACA
AGTACTGCACCCCAAATTGCCGAGTCAGGGTAACGAAGCTTACCATC
Done.